ARC Application/Library Module List
This is a list of the currently installed applications/libraries on the Oxford University ARC/HTC clusters.
For information on how to load modules and other important information see the following documents:
Contents
- ABINIT
- ABySS
- ACTC
- ADMIXTURE
- ADOL-C
- AMOS
- ANSYS
- ANTLR
- APR
- APR-util
- ASE
- ATK
- AUGUSTUS
- Abaqus
- Advisor
- AlphaFold
- Amber
- AmberTools
- Anaconda2
- Anaconda3
- Armadillo
- Arriba
- Arrow
- Aspera-CLI
- Aspera-Connect
- AutoDock
- AutoDock-Vina
- AutoDock_Vina
- Autoconf
- Automake
- Autotools
- BAGEL
- BCFtools
- BEDTools
- BLAST
- BLAST+
- BLAT
- BLIS
- BRAKER
- BWA
- BamTools
- BayeScEnv
- BayesTraits
- Bazel
- Beagle
- Beast
- BeautifulSoup
- Bio-SearchIO-hmmer
- BioPerl
- Biopython
- Bismark
- Bison
- Blender
- Blosc
- Bonnie++
- Boost
- Boost.Python
- Bowtie
- Bowtie2
- Brotli
- CASTEP
- CD-HIT
- CDO
- CFITSIO
- CGAL
- CIF2Cell
- CLHEP
- CMake
- CP2K
- CPLEX
- CREST
- CUDA
- CUDAcore
- CUnit
- CVXOPT
- Cactus
- CapnProto
- Cartopy
- CellRanger
- CellRank
- CheMPS2
- Check
- Clang
- ClonalFrameML
- ClustalW2
- ConnectomeWorkbench
- CppUnit
- CubeGUI
- CubeLib
- CubeWriter
- Cufflinks
- Cython
- DB
- DB_File
- DBus
- DFT-D3
- DFT-D4
- DIALS
- DIAMOND
- DL_POLY_4
- DL_POLY_Classic
- DOLFIN
- Doxygen
- EIGENSOFT
- ELPA
- ESM-2
- ESMF
- EasyBuild
- Eigen
- Elk
- Emacs
- Exonerate
- Extrae
- FCM
- FEniCS
- FFC
- FFTW
- FFTW.MPI
- FFmpeg
- FIAT
- FLAC
- FLAIR
- FLASH
- FLINT
- FLTK
- FSL
- FastFold
- FastME
- FastQC
- FastTree
- Fiji
- FineSTRUCTURE
- Fiona
- Flask
- FlexiBLAS
- FreeSurfer
- FreeXL
- FriBidi
- GATK
- GCC
- GCCcore
- GConf
- GDAL
- GDRCopy
- GEOS
- GL2PS
- GLM
- GLPK
- GLib
- GLibmm
- GMAP-GSNAP
- GMP
- GObject-Introspection
- GPAW
- GPAW-setups
- GRASS
- GROMACS
- GSL
- GST-plugins-bad
- GST-plugins-base
- GStreamer
- GTK+
- GTK2
- GTK3
- GTK4
- GTS
- Gaussian
- Gaussview
- Gdk-Pixbuf
- Geant4
- Geant4-data
- GeneMark-ET
- GenomeThreader
- GenomeTools
- GeoMxNGSPipeline
- Ghostscript
- GitPython
- GlobalArrays
- Globus-CLI
- GlobusConnectPersonal
- Glucose
- GnuTLS
- Go
- Grace
- Graphene
- GraphicsMagick
- Graphviz
- Guile
- Guppy
- Gurobi
- HDF
- HDF5
- HH-suite
- HISAT2
- HMMER
- HMMER2
- HTSlib
- HarfBuzz
- HemeLB
- HyPhy
- Hypre
- ICU
- IDBA-UD
- IGV
- IMPUTE2
- IOR
- IPython
- IQ-TREE
- ISA-L
- ImageMagick
- Imath
- Infernal
- Ipopt
- JAGS
- Jansson
- JasPer
- Java
- Jellyfish
- JsonCpp
- Judy
- Julia
- JupyterHub
- JupyterLab
- KMC
- Kalign
- Kent_tools
- Keras
- Kraken2
- LAME
- LAMMPS
- LAPACK
- LDC
- LLVM
- LMDB
- LTR_retriever
- LZO
- Leptonica
- LibSoup
- LibTIFF
- Libint
- Lighter
- LinkTest
- LittleCMS
- Lua
- M4
- MACS2
- MAFFT
- MALT
- MATIO
- MATLAB
- MCL
- MDAnalysis
- MEGAHIT
- MEME
- METIS
- MGLTools
- MIRA
- MMseqs2
- MOOSE
- MPC
- MPFR
- MPICH2
- MUMPS
- MUMmer
- MUSCLE
- MaSuRCA
- Mako
- Mamba
- MariaDB
- MariaDB-connector-c
- Mash
- Mathematica
- MaxQuant
- Mellanox
- Mercurial
- Mesa
- Meson
- MetaPhlAn2
- MiniSat
- Miniconda3
- Molden
- Mono
- Mothur
- MrBayes
- MultiQC
- Multiwfn
- MySQL
- NAMD
- NASM
- NCCL
- NCO
- NEURON
- NGS
- NLopt
- NSPR
- NSS
- NVHPC
- NWChem
- NetLogo
- NgsRelate
- Ninja
- OPARI2
- ORCA
- OSU-Micro-Benchmarks
- OTF2
- Octave
- OpenBLAS
- OpenBabel
- OpenCV
- OpenColorIO
- OpenEXR
- OpenFOAM
- OpenFOAM-ESI
- OpenFold
- OpenImageIO
- OpenJPEG
- OpenMM
- OpenMPI
- OpenMolcas
- OpenPGM
- OpenSSL
- OpenSees
- OptaDOS
- OrthoFinder
- PAPI
- PAUP
- PCMSolver
- PCRE
- PCRE2
- PDT
- PEPPAN
- PETSc
- PGI
- PIRATE
- PLINK
- PLINKSEQ
- PLUMED
- PLY
- PMIx
- POV-Ray
- PRANK
- PROJ
- PSI4
- Pango
- ParMETIS
- ParaView
- PennCNV
- Perl
- PhyloBayes-MPI
- Pillow
- Pillow-SIMD
- Pilon
- Platypus
- Pmw
- PnetCDF
- PostGis
- PostgreSQL
- ProtoMS
- PyCairo
- PyCharm
- PyCifRW
- PyGObject
- PyGTK
- PyMOL
- PyQt5
- PySCF
- PyTables
- PyTorch
- PyTorch-Lightning
- PyYAML
- Pysam
- Python
- QCA
- QGIS
- QIIME2
- QScintilla
- QUAST
- Qhull
- Qiskit
- Qt5
- Qt5Webkit
- QtKeychain
- Quandl
- QuantumESPRESSO
- Qwt
- R
- R-bundle-Bioconductor
- RAxML
- RAxML-NG
- RDKit
- RE2
- RECON
- RELION
- RMBlast
- ROOT
- RStudio
- RapidJSON
- Ray-assembler
- RepeatMasker
- RepeatModeler
- RepeatScout
- RevBayes
- Ruby
- Rust
- SAMtools
- SCOTCH
- SCons
- SDL2
- SIONlib
- SKESA
- SLEPc
- SNPsplit
- SNeP1
- SOAPdenovo2
- SOCI
- SPAdes
- SQLite
- SRA-Toolkit
- STAR
- STARCCM+
- STEAK
- SUNDIALS
- SWIG
- Salmon
- ScaFaCoS
- ScaLAPACK
- Scalasca
- SciPy-bundle
- Score-P
- Seaborn
- SegAlign
- SentencePiece
- SeqKit
- Serf
- Shapely
- Siesta
- Stacks
- Stata
- Subversion
- SuiteSparse
- SuperLU
- SuperLU_DIST
- SymEngine
- SymEngine-python
- Szip
- TEtranscripts
- TRF
- TWL-NINJA
- Tcl
- TensorFlow
- Theano
- Tinker9
- Tk
- Tkinter
- Togl
- TopHat
- TreeMix
- Trilinos
- Trim_Galore
- Trimmomatic
- Trinity
- TwoBit
- UCC
- UCX
- UCX-CUDA
- UDUNITS
- UFL
- UMI-tools
- UNICOR
- UnZip
- V8
- VASP
- VCF-kit
- VCFtools
- VMD
- VTK
- VTune
- Valgrind
- Vampire
- Velvet
- Vim
- Voro++
- WIEN2k
- Wannier90
- WannierTools
- Wayland
- Waylandpp
- WebKitGTK+
- X11
- XCFun
- XCfun
- XCrySDen
- XMDS2
- XML-LibXML
- XML-Parser
- XZ
- Xvfb
- YAXT
- Yasm
- Z3
- ZeroMQ
- Zip
- aiohttp
- angsd
- annovar
- ant
- archspec
- aria2
- arpack-ng
- arrow-R
- at-spi2-atk
- at-spi2-core
- attrdict3
- autode
- bcl2fastq2
- beagle-lib
- binutils
- bokeh
- breseq
- bwidget
- bzip2
- c-ares
- c2x
- cURL
- cairo
- ccache
- cfx
- chewBBACA
- colossalai
- configurable-http-proxy
- constraint
- cppy
- crest
- cuDNN
- cutadapt
- cylc
- dask
- datamash
- dbus-glib
- deepdiff
- dftd4
- dijitso
- dill
- dm-tree
- dmd
- dot
- double-conversion
- ecCodes
- eilmer
- einops
- elfutils
- enaBrowserTools
- enchant-2
- exiv2
- expat
- expecttest
- fast-gbs
- fdmnes
- fdmnes-parallel
- file
- fineRADstructure
- fineSTRUCTURE
- flappie
- flatbuffers
- flatbuffers-python
- flex
- fluent
- fontconfig
- foss
- fosscuda
- freeglut
- freetype
- garlic
- gawk
- gc
- gcccuda
- gdc-client
- geopandas
- geth
- gettext
- gflags
- giflib
- git
- git-lfs
- glew
- glib-networking
- glog
- gmpy2
- gmsh
- gnuplot
- gompi
- gompic
- googletest
- gperf
- gperftools
- graphite2
- grib_api
- groff
- gromacs
- gromacs-cp2k
- gromos
- gubbins
- gzip
- h5py
- help2man
- hiredis
- hptt
- htop
- hunspell
- hwloc
- hypothesis
- icc
- iccifort
- iccifortcuda
- ifort
- iimpi
- iimpic
- imkl
- imkl-FFTW
- impi
- intel
- intel-compilers
- intelcuda
- intltool
- iomkl
- iompi
- itensor
- jax
- jbigkit
- jemalloc
- jupyter-server
- kallisto
- kim-api
- kwant
- libGLU
- libaio
- libarchive
- libcerf
- libcint
- libctl
- libdap
- libdeflate
- libdrm
- libdwarf
- libedit
- libelf
- libepoxy
- libev
- libevent
- libexif
- libfabric
- libffi
- libgcrypt
- libgd
- libgdiplus
- libgeotiff
- libgit2
- libglade
- libglvnd
- libgpg-error
- libgpuarray
- libiconv
- libidn
- libidn2
- libjpeg-turbo
- libmatheval
- libogg
- libopus
- libpciaccess
- libpng
- libpsl
- libpsortb
- libreadline
- librttopo
- libsigc++
- libsndfile
- libsodium
- libspatialindex
- libspatialite
- libtasn1
- libtirpc
- libtool
- libunistring
- libunwind
- libvdwxc
- libvorbis
- libwebp
- libwpe
- libxc
- libxml++
- libxml2
- libxslt
- libxsmm
- libyaml
- libzip
- likwid
- lpsolve
- lxml
- lz4
- magma
- make
- makeinfo
- matplotlib
- mdtep
- minimap2
- minizip
- mm-common
- module-git
- module-info
- modules
- molmod
- motif
- mpi
- mpitest
- mpmath
- mule
- muparserx
- ncbi-vdb
- ncdf4
- ncurses
- ncview
- netCDF
- netCDF-C++4
- netCDF-Fortran
- netcdf4-python
- nettle
- networkx
- nghttp2
- nghttp3
- ngsF
- ngsLD
- ngspice
- ngtcp2
- nlohmann_json
- nodejs
- nsync
- null
- numactl
- numba
- nvtop
- orthomcl
- p11-kit
- parallel
- patchelf
- petsc4py
- picard
- pigz
- pixman
- pkg-config
- pkgconf
- pkgconfig
- plotly.py
- pmi
- pocl
- preseq
- prism
- prodigal
- prokka
- protobuf
- protobuf-python
- psutil
- psycopg2
- pugixml
- pullseq
- pyABC
- pybedtools
- pybind11
- pyproj
- pytest-xdist
- python-isal
- qcint
- qrupdate
- rclone
- re2c
- retworkx
- rgdal
- rose
- rosetta
- rpy2
- sabre
- samclip
- scVelo
- scikit-build
- scikit-learn
- scipy
- screen
- semver
- seqtk
- shovill
- slepc4py
- smilei
- snakemake
- snappy
- snp-sites
- spaln
- sparsehash
- spdlog
- spglib
- spglib-python
- spython
- statsmodels
- sympy
- tbb
- tbl2asn
- tensorboard
- tensorflow-probability
- tesseract
- testapp
- texinfo
- tmux
- torchtext
- torchvision
- tqdm
- typing-extensions
- use.own
- utf8proc
- util-linux
- wget
- wpebackend-fdo
- wtdbg2
- wxPython
- wxWidgets
- x264
- x265
- xorg-macros
- xprop
- xtb
- xxd
- yaff
- yaml-cpp
- zlib
- zstd